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SRX6373786: GSM3910175: smNPCWT_S1_L002; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 51.7M spots, 2.6G bases, 1Gb downloads

Submitted by: NCBI (GEO)
Study: Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development
show Abstracthide Abstract
Many current cellular models aimed to elucidate cancer biology do not recapitulate pathobiology including tumor heterogeneity, an inherent feature of cancer that underlies treatment resistance. Here we introduce a new cancer modeling paradigm using genetically engineered human pluripotent stem cells (hiPSCs) that capture authentic cancer pathobiology. Orthotopic engraftment of the neural progenitor cells derived from hiPSCs introduced with tumor-associated genetic driver mutations revealed by The Cancer Genome Atlas project for glioblastoma (GBM) results in formation of brain tumors. As observed in GBM patient samples, these models harbor inter-tumor heterogeneity resembling different GBM molecular subtypes, and intra-tumor heterogeneity. Further, re-engraftment of these tumor cells generate tumors with features characteristic of patient samples and present mutation-dependent patterns of tumor evolution. Thus, these cancer avatar models provide a platform for a comprehensive longitudinal assessment of human tumor development as governed by molecular subtype mutations. Overall design: iGBM models (all in duplicates): TP53-/-;PDGFRA?8-9; PTEN-/-;NF1-/-; and controls
Sample: smNPCWT_S1_L002
SAMN12158273 • SRS5034603 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from the differentiated smNPCs using RNeasy Plus Mini Kit and was reverse transcribed using RNA to cDNA EcoDry Premix according to the manufacturer's instruction. RNA libraries were generated using llumina's TruSeq Stranded mRNA Sample Prep Kit (Illumina) following manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM3910175
Links:
Runs: 1 run, 51.7M spots, 2.6G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR961054651,688,8632.6G1Gb2019-12-13

ID:
8438972

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